DArT project
DArT of CIMMYT lines 2005We are pleased to provide DArT data from 275 of the above lines, genotyped on 1,058 markers in the prototype of Triticarte's wheat version 2.5 array, which should contain most of the markers polymorphic in wheat. The overall call rate is 95.1%. As not all markers have yet received a name, please use the CloneID as an unambiguous identifier while mapping is in progress. DArT markers are biallelic dominant markers. Each marker is scored for each sample: 0, 1, or -. The "X" stands for missing data: the marker could not be reliably scored for that sample. The Q value is an estimate of marker quality based on ANOVA, reflecting how well the two phases (Present = 1 vs Absent = 0) of the marker are separated in this sample set. Markers with Q value above 80 are very reliable. Use markers with Q value under 77 with caution since the risk of scoring errors in these markers becomes significant. The call rate is the number of effective scores divided by the number of samples. The PIC value measures the distribution of 0 and 1 scores in the sample set. The highest PIC value is 0.5 and means that the marker is distributed 50-50 in the population analysed. In column C (Chromosome) Triticarte provides a tentative assignment based on 9 well-curated hexaploid wheat genetic maps, available as a downloadable Excel file on the Triticarte web site. They request that if you find any discrepancy in the chromosome assignment based on your knowledge of the material, This e-mail address is being protected from spambots. You need JavaScript enabled to view it . |
|
Synthetics - (first 3 shipments) 2001 - 2004
|
|---|
|
Synthetics_DArT report (zip file) (report no. DW07-210_159)
Read Me file about tracking errors detected Final updated file from Triticarte - FinalReportDW07159_210 (1.6Mb) - please read note from Clare Johnson's email before downloading file *** NEW |
|
IAT (International Adaptation trials) - 2004 Robinvale & 2005 Duaringa
|
|
1st IAT_DArT report* (zip file) (report no. DW07-136) Final updated file from Triticarte - FinalReportDW07-136withMarkerName (1.9Mb) - please read note from Clare Johnson's email before downloading file *** NEW |
|
IAT DArT report - DW08-267* (zip file)
Read these important notes on the file DW08-267 *Please note:The Excel file contains additional worksheets, containing a comparison matrix of all samples against each other. This shows up which are duplicates/mixed up. |
|
ESWYTs (2nd to 25th nurseries)
|
|
List of screened genotypes
|
|
ESWYT_DArT report (zip file)
|
|
GET (Germplasm Evaluation Trials) - 2005 shipment
|
|
2005GET_DArT report (zip file) (report no. DW08-230)
|
|
GET (Germplasm Evaluation Trials) - 2006 shipment
|
| 2006 GET DArT report (report no DW08-353) |
| List of screened genotypes |
| Control varieties for traits phenotyped in primary synthetics |
| 2005 & 2006 Shipments - 1B1R presence analysis from DArT results |
| 1B1R presence |
